HN22FAFXY_n02_735.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HN22FAFXY_n02_735.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7672088
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	105259	1.371973314174707	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	40543	0.5284480574258272	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	7975	43.622173	47
GGTCGCC	8275	42.548233	44
GTCGCCG	8460	41.32822	45
TCGCCGT	8445	41.277298	46
CCGTATC	8355	41.135483	49
CTCGGTG	8715	39.35671	38
GTGGTCG	8975	39.11298	42
GCCGTAT	9045	38.268314	48
CGTATCA	9090	37.963604	50
ATCTCGG	9195	37.378815	36
TCTCGGT	9210	37.27969	37
TGGTCGC	9705	36.098816	43
GATCTCG	9480	35.775826	35
TCGGTGG	9915	35.334705	39
GGTGGTC	10220	34.451424	41
AGATCTC	10160	33.690765	34
CGTGTAG	10880	33.197056	16
AGCGTCG	11300	32.706936	11
GCGTCGT	11340	32.59157	12
CGGTGGT	10945	32.265285	40