HN22FAFXY_n02_1558.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HN22FAFXY_n02_1558.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9037236
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	117621	1.3015151977883503	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	59139	0.6543925598490512	Illumina Single End PCR Primer 1 (100% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	14005	33.461956	47
GGTCGCC	14295	33.101402	44
GTCGCCG	14525	32.16762	45
TCGCCGT	14565	31.983164	46
GCCGTAT	14795	31.911943	48
CCGTATC	14755	31.87985	49
GTGGTCG	14975	31.36441	42
CGTATCA	15395	30.736416	50
CTCGGTG	15100	30.410442	38
ATCTCGG	15640	29.718685	36
TCTCGGT	15735	29.36131	37
GGTGGTC	16095	29.181858	41
GATCTCG	15720	29.099886	35
TCGGTGG	16265	28.769426	39
TGGTCGC	16895	27.924046	43
CGGTGGT	16965	27.850393	40
AGATCTC	16770	27.820679	34
AGCGTCG	19015	27.737259	11
GCGTCGT	19100	27.613974	12
CGTGTAG	18810	27.51873	16