FastQCFastQC Report
Wed 23 Mar 2022
HMYYNDRXY_l01_n01_RS50J2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYYNDRXY_l01_n01_RS50J2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9626869
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCTTATAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTCTTTGGG321970.3344493417330183No Hit
CAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTGCTTATAGGACT119200.12382011222963561No Hit
CATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGA98210.10201655387644727No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)