FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n02_SAL180-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n02_SAL180-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50758566
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCGTAT2657150.017.71112494-95
CCGTATC2004600.017.59142594-95
CGCCGTA3291700.016.93635294-95
CGTATCA1598650.015.88530894-95
TATACCG148350.015.6890765
TCATTAA982550.014.47253794-95
CATTAAA853250.014.3218594-95
TCGCCGT4048350.013.17305294-95
GTATCAT1385400.013.04837994-95
GTCTAGG159750.012.7609441
TAGACGG77700.012.5931685
AGTACCG133800.012.2121225
ATCATTA1109550.012.00255694-95
GTATAGG209200.011.7661521
GTCGCCG4892050.011.69703492-93
TGGTCGC4899600.011.57758290-91
GTCTATG185000.011.4559091
TATACTG236050.011.4497795
CCTAGAC153000.011.4247113
GGTCGCC4782900.011.41130692-93
Produced by FastQC (version 0.11.5)