FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n02_NON60-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n02_NON60-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85721783
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG102550.031.8207175
GTCTAGG254300.022.9839691
ATAGACG133250.021.459434
TATACCG288850.020.9172065
GACGGTC143100.020.7114037
TAGAGCG261900.019.7687825
GTACCGT170250.019.585696
GTCTATG318500.019.2910251
GTATCAT2579500.019.05278694-95
ACTGTCC163400.018.9231998
ATCATTA1755600.018.8878594-95
TATCATT2185750.018.80128194-95
CTAGACA323650.018.4626454
CCTAGAC256350.018.2512173
CGTATCA3082250.017.8730894-95
TCATTAA1364150.017.8604494-95
AGTACCG243700.017.8342345
TACACCG185850.017.3027465
ACTGAGC388350.017.2082378
CCGTATC3672800.017.00658294-95
Produced by FastQC (version 0.11.5)