FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n02_NON60-S-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n02_NON60-S-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164383202
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCATTAA7332800.025.3648394-95
CATTAAA5029050.024.34298794-95
ATCATTA10002350.024.23645894-95
TAGACGG153250.023.8975
TATACCG380400.021.9891435
TATCATT12908200.021.93515894-95
GTACCGT226700.020.2192676
GTCTAGG390500.020.0176941
GTATCAT15965600.019.36343694-95
ACTGTCC227850.018.88628
AGTACCG333500.018.173745
TAGAGCG396250.017.8130785
TACCGTG301300.017.6240927
CTAGACA389850.017.1064154
CACTGAG517700.017.0922327
ACTGAGC507550.017.0129838
GGACTGC293150.016.9485036
GTCTATG444450.016.8607921
AAGACCG331600.016.8454365
CGTATCA19364150.016.62944294-95
Produced by FastQC (version 0.11.5)