FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n02_NON180-S-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n02_NON180-S-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116802422
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG124100.024.7258265
GTCTAGG299050.023.1829031
ATCATTA3452700.022.5778294-95
TCATTAA2581400.022.19274594-95
TATACCG294800.021.2845975
TATCATT4465850.021.14029594-95
GTATCAT5487100.020.10368794-95
CATTAAA1816700.019.81221894-95
GTACCGT194850.019.623916
TAGAGCG278850.019.1974415
GTCTATG354600.018.8409541
AGTACCG262250.018.78255
CGTATCA6769250.018.51164494-95
ACTGAGC398150.018.3116768
ACTGTCC185150.018.111218
CCTAGAC304800.018.0461143
GGACTGC247750.017.9453646
CTAGACA334150.017.9109734
CACTGAG407950.017.7785957
GTATAAG482000.017.3706151
Produced by FastQC (version 0.11.5)