FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n02_NON15-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n02_NON15-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103151010
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCATTA3952550.023.12919294-95
TCATTAA2996350.023.00037694-95
TATCATT5130750.021.6578794-95
CATTAAA2139550.021.063394-95
GTATCAT6429450.020.44054694-95
TAGACGG107700.020.4198675
TATACCG228550.019.9723785
GTCTAGG237850.019.4191471
ACTGTCC163600.018.9000438
CGTATCA8024000.018.56691294-95
TAGAGCG240000.018.4455785
CCTAGAC256850.017.9752253
CTAGACA263250.017.6825684
TACACCG189800.017.6183035
CTAGACG114450.017.1819384
GTACCGT162150.017.1659666
GTATAGG379000.017.0767381
GTCTATG281150.016.8509391
CTATACT381500.016.820874
CCGTATC9766450.016.80399194-95
Produced by FastQC (version 0.11.5)