FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n01_SAL15-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n01_SAL15-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90893817
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG96450.031.3216845
GTCTAGG263950.024.2177661
GTACCGT144750.023.8892236
TATACCG269750.023.2083445
GGACTGC195400.021.39186
CTTCTGC1924250.021.37707594-95
AGTACCG209150.021.2573035
CCTAGAC273050.021.0146833
GTCTATG305550.020.858351
CTAGACA281300.020.5500764
GACGGTC126950.020.2415717
TTCTGCT1451200.020.19480594-95
ACTGTCC141350.020.0276558
GCCCTAG158600.019.9574261
TAGAGCG237300.019.956655
ACTGAGC301100.019.9238058
TACACCG186050.019.8883135
CACTGAG338050.019.7693717
TCTTCTG2601600.019.65578894-95
GTGTATG351250.019.2811091
Produced by FastQC (version 0.11.5)