FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n01_NON180-S-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n01_NON180-S-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116802422
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG130650.026.5765255
GTCTAGG293800.023.2621021
CTTCTGC3224250.022.7562994-95
TTCTGCT2304750.022.61290494-95
TATACCG304600.022.0812455
TCTTCTG4363100.020.74460294-95
TAGAGCG290100.020.3850545
ACTGTCC188950.020.18598
GTACCGT186500.019.6620046
GTCTTCT5341850.019.63857794-95
ACTGAGC402600.019.3368028
CACTGAG417150.019.2544367
GTCTATG364500.019.1934091
GACAGTG209500.019.0673987
CCTAGAC311600.018.9484143
TCTGCTT1719150.018.80443894-95
TACACCG230750.018.6704945
CTAGACA342050.018.1639794
AGTACCG260150.018.1490045
GTATAGG482750.018.1051161
Produced by FastQC (version 0.11.5)