FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n01_NON15-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n01_NON15-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103151010
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTCTGCT2949400.024.02573494-95
CTTCTGC4078250.023.15797294-95
TAGACGG102650.022.2112035
TCTGCTT2131850.021.50787594-95
GTCTAGG244300.021.185881
TCTTCTG5546150.021.15703694-95
TATACCG228900.019.941945
GTCTTCT6895800.019.91901694-95
ACTGTCC160100.019.9071648
GTACCGT164200.019.7577466
TACACCG198400.019.2009415
TAGAGCG237050.019.0158635
CCTAGAC254800.018.1202953
CGTCTTC8627300.017.96015494-95
AGTACCG223550.017.954445
CTATACT390450.017.8953174
GTATAAG379400.017.8634051
GTATAGG373200.017.7781221
GTCTATG275200.017.4254821
GTGTATG309950.017.373221
Produced by FastQC (version 0.11.5)