FastQCFastQC Report
Mon 19 Oct 2020
HMYNCDRXX_n01_EXW60-W-R3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYNCDRXX_n01_EXW60-W-R3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96501018
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG124700.026.816255
GTCTAGG288100.023.7391451
GTCTATG322550.022.4708961
TATACCG278050.022.3277285
CCTAGAC280850.021.3782843
CTAGACA295000.020.3686774
ACTGTCC222750.020.3640968
AACAGAC280000.020.034177
GTACCGT223350.020.0122326
ATAGACG132450.019.4016934
GTGTATG374850.019.170871
AGTACCG292550.019.1428035
TTCTGCT1275650.019.039694-95
GACAGTG293650.018.9896767
TCTTCTG2192050.018.95168194-95
TATACTG347750.018.6447855
GTATAAG368600.018.5030861
CTTCTGC1807100.018.47803794-95
TACACCG239750.018.4055565
CACTGAG562000.018.3739577
Produced by FastQC (version 0.11.5)