FastQCFastQC Report
Fri 2 Oct 2020
HMYN5DRXX_n01_CUI60-S-R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMYN5DRXX_n01_CUI60-S-R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123895532
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGACGG118950.028.0730275
TTCTGCT4310900.026.07805694-95
CTTCTGC5948850.024.07850694-95
TCTGCTT3038250.023.98501894-95
GTACCGT176700.022.5002446
GTCTAGG315700.021.8335821
TATACCG340700.021.1779545
TCTTCTG7912200.020.79005694-95
AGTACCG263700.020.2467145
CTGCTTG1829200.020.13604594-95
ACTGTCC181850.019.7724158
GGACTGC239850.019.4279796
TACCGTG228450.018.920277
GTCTATG372650.018.9053671
GTCTTCT9554800.018.2653894-95
TACACCG231100.018.210935
CCTAGAC343650.018.204513
CACTGAG430150.018.1092767
ACTGAGC393150.018.0738418
GTGTATG416650.017.9478451
Produced by FastQC (version 0.11.5)