HMYHGBBXX_l06n01_las50.351000000b734f.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMYHGBBXX_l06n01_las50.351000000b734f.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9950462
Sequences flagged as poor quality	0
Sequence length	76
%GC	38

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC	315323	3.1689282366989593	TruSeq Adapter, Index 1 (100% over 50bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCC	28825	0.28968504175987003	TruSeq Adapter, Index 1 (100% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGAGCTCGTATGC	15760	0.15838460565951612	TruSeq Adapter, Index 1 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGAACTCGTATGC	15524	0.1560128564884726	TruSeq Adapter, Index 1 (98% over 50bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGACCTCGTATGC	13851	0.1391995668140836	TruSeq Adapter, Index 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGATCTC	39825	58.142258	38
GATCTCG	39885	58.07908	39
CTCGTAT	45935	57.974075	42
CGTATGC	46445	57.857426	44
TCGTATG	46410	57.840733	43
CACGATC	39870	57.825554	36
TATGCCG	46485	57.66865	46
ATGCCGT	45350	57.65268	47
ACGATCT	40070	57.622253	37
TGCCGTC	45295	57.54467	48
GCCGTCT	44950	57.49578	49
GTATGCC	46620	57.396545	45
CATCACG	47160	56.732483	33
ATCACGA	47155	56.360798	34
TCACGAT	41220	56.29003	35
CTGCTTG	47330	56.19621	57
CCGTCTT	45900	56.180664	50
TCTCGTA	41650	55.896835	41
ATCTCGT	42150	55.050266	40
ACATCAC	48815	54.99575	32