HMYHGBBXX_l05n01_las64.351000000b71c7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMYHGBBXX_l05n01_las64.351000000b71c7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	22496276
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTAT	2277626	10.12445793250403	TruSeq Adapter, Index 14 (97% over 44bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTATCTCGTATG	573282	2.5483417788793132	TruSeq Adapter, Index 14 (97% over 43bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTAGCTCGTAT	64688	0.28754981491158804	TruSeq Adapter, Index 14 (97% over 41bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTAACTCGTAT	54648	0.2429202059932053	TruSeq Adapter, Index 14 (97% over 41bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTTCCGTACCTCGTAT	35591	0.15820840747152995	TruSeq Adapter, Index 14 (97% over 41bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	317160	59.65822	1
GCCGTCT	325490	53.61653	51
ATGCCGT	334355	53.61035	49
TGCCGTC	327080	53.609463	50
CGTATGC	342625	53.509914	46
CTCGTAT	342825	53.454674	44
CGTATCT	317200	53.447502	39
GTATGCC	342765	53.38082	47
TATGCCG	342855	53.36147	48
TCGTATG	344110	53.35382	45
CCGTATC	319470	53.34197	38
CCGTCTT	326095	53.279335	52
GTATCTC	318885	53.20949	40
TCCGTAT	320940	53.168076	37
TCTCGTA	321475	53.11775	43
TATCTCG	320555	53.04819	41
GTTCCGT	344990	52.99472	35
CTGCTTG	336415	52.96435	59
ATCTCGT	323255	52.95471	42
GTCACAG	347835	52.904015	29