FastQCFastQC Report
Mon 9 May 2022
HMWN5BGXL_n01_aHHO3_P2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMWN5BGXL_n01_aHHO3_P2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4966559
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTAGT62070.12497586357073379No Hit
CGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAAG56920.1146065112686671No Hit
TTTAAGTATATCAATAAGCGGAGGAAAAGAAACTAACAAGGATTCCCTTA52890.10649224140899163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)