FastQCFastQC Report
Thu 18 Jul 2019
HMWG7AFXY_n01_O2_Strep201907_ChIP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMWG7AFXY_n01_O2_Strep201907_ChIP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13068616
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCCGG94750.013.009085145
AGTGATG280000.011.704623145
GTGATCG129450.08.513705145
CTGAACA104650.07.482756145
TCTGCTT503450.06.826515145
GCTTGAA401050.06.689294145
CCGTCTT577100.06.6086345145
CTGCTTG488150.06.386931145
CTTGAAA437700.06.3445277145
CGTATGC729850.06.3083696145
TATGCCG701950.06.18725145
GTATGCC722600.06.140878145
CTCGTAT710450.05.960139145
TCGTATG769350.05.9373636145
TCTTCTG590500.05.820168145
GCCGTCT623250.05.719178140-144
TGCTTGA469900.05.678314145
ATGCCGT688350.05.4921923140-144
TGCCGTC672600.05.489282140-144
TCTCGTA738000.05.484253140-144
Produced by FastQC (version 0.11.5)