FastQCFastQC Report
Thu 18 Jul 2019
HMWG7AFXY_n01_KN1_Strep201906_ChIP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMWG7AFXY_n01_KN1_Strep201906_ChIP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7851262
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTGA181150.07.324731145
AGCACAC259400.07.2395024145
GTCACAT105200.06.8233614145
ACGTCTG212750.06.7820725145
GTCTGAA198350.06.616454145
AGAGCAC287600.06.55486145
GCACACG243050.06.50339145
ACACGTC210900.06.4633875145
TCTGAAC169750.06.4497976145
CACACGT220600.06.376394145
ATCGGAA370500.06.2819686145
TCGGAAG339250.06.1767054145
CGTATGC37750.06.146275145
CTGAACT196150.06.0252934145
CTCCAGT151550.05.8847513145
TCTCGTA44750.05.768082140-144
CGGAAGA345950.05.7427145
TCTCGTT22751.884541E-55.7368045145
TCACATG120700.05.6467624145
GAGCACA330750.05.5462523145
Produced by FastQC (version 0.11.5)