FastQCFastQC Report
Thu 18 Jul 2019
HMWG7AFXY_n01_GFP_Strep201907_ChIP.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMWG7AFXY_n01_GFP_Strep201907_ChIP.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14048680
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTAGT61650.06.70268257
CCGTCTT321150.06.4796333145
CACGATG129950.06.3049064145
TCGTATG398500.06.004296145
GTATGCC377850.05.8910866145
CTCGTAT395500.05.8115134145
CGTAGTT81100.05.81031138
GCTTGAA247200.05.7195597145
CGTATGC359800.05.6828265145
TATGCCG356650.05.651699145
AGCCGTA77500.05.61493975
GCCGTCT346850.05.3932986145
ATCTCGT450900.05.386926145
TCTCGTA412200.05.3649826145
CATCACG599500.05.345761145
ATGCCGT358750.05.315453145
TCTGCTT330750.05.2612367145
CGATCTC496000.05.218708145
CAGTCAC782950.05.130411145
GTAGCCG85200.05.10748623
Produced by FastQC (version 0.11.5)