FastQCFastQC Report
Tue 6 Dec 2022
HMTJCDRX2_n01_EN009.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMTJCDRX2_n01_EN009.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23194130
Sequences flagged as poor quality0
Sequence length101
%GC57

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT1671095972.04822513282456TruSeq Adapter, Index 3 (97% over 36bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTA485830.2094624803775783TruSeq Adapter, Index 10 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTATG470990.20306430980597248TruSeq Adapter, Index 3 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGAAT432360.1864092337155996TruSeq Adapter, Index 3 (97% over 36bp)
GATCGGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTA285630.12314753776063167TruSeq Adapter, Index 3 (96% over 32bp)
GATCGGAAGAGCACACGTCTGAACTCAGTCACTAATGCGCATCTCGTATG282340.12172907541692661Illumina Multiplexing PCR Primer 2.01 (96% over 26bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)