FastQCFastQC Report
Wed 26 Sep 2018
HMT73BGX7_n02_HAP1_ATAC_S1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMT73BGX7_n02_HAP1_ATAC_S1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166211516
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGCT678650.034.3804926
GAATCGC668250.034.0941725
AGAATCG699950.033.64780824
GATTACA4684550.033.62341314
GGATTAC4640950.033.5953913
GGGATTA4953850.033.5501212
ATCGCTT816500.033.18234627
ATTACAG4691800.033.0893315
CGCTTGA806600.032.79992329
TGGGATT5214850.032.564911
TACAGGC4145600.032.4814717
TTACAGG4570100.032.33420616
TCGCTTG816850.032.3232828
ACAGGCG1943700.031.64101618
TTGAACC1825550.031.6218932
AGGCCGA1406750.031.2206911
CTGGGAT5323250.031.17112210
CGGATCA764100.030.60800424
GGACTAC1513000.030.32384513
GCGGATC764550.030.28625723
Produced by FastQC (version 0.11.5)