FastQCFastQC Report
Wed 26 Sep 2018
HMT73BGX7_n01_HAP1_ATAC_S2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMT73BGX7_n01_HAP1_ATAC_S2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166736561
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGCT697300.034.42992826
GAATCGC689550.034.0665125
AGAATCG723300.033.5188624
GGATTAC4551950.033.3492413
GGGATTA4848900.033.27730612
GATTACA4613000.033.259514
ATCGCTT843450.032.88344227
ATTACAG4614050.032.805815
CGCTTGA823250.032.76922629
TGGGATT5116950.032.33292811
TACAGGC4109650.032.12441317
TCGCTTG841500.032.0346528
TTACAGG4523750.031.98654716
TTGAACC1882850.031.45418232
ACAGGCG1918150.031.2855518
CTGGGAT5239950.030.87717210
AGGCCGA1359450.030.5066711
CGGATCA742500.030.19191624
GCGGATC745700.029.96580723
CTACTCG919350.029.9080122
Produced by FastQC (version 0.11.5)