Basic Statistics
Measure | Value |
---|---|
Filename | HMT3KBGX7_n02_QG3423.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1886279 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 47 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGGG | 221002 | 11.716294355182875 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 51347 | 2.7221317737195823 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAGGGGGGGGGGGGGGGGGGGG | 13906 | 0.7372186193028709 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGCC | 13177 | 0.6985711021540292 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGCG | 10476 | 0.5553791353240957 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGG | 8516 | 0.45147085876479565 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTGGGGGGGGGGG | 5313 | 0.2816656496732456 | No Hit |
GGGGGGGGGGGCGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGGG | 2762 | 0.14642584686570756 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTATGGGGGGGGGG | 1887 | 0.10003822340173432 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGTTAA | 17010 | 0.0 | 69.10734 | 54 |
GGGGTTA | 16850 | 0.0 | 68.97431 | 53 |
GGTTAAA | 17155 | 0.0 | 68.877335 | 55 |
GGGGGTT | 18120 | 0.0 | 67.77096 | 52 |
GTTAAAA | 17990 | 0.0 | 67.13954 | 56 |
TTTGGGG | 31930 | 0.0 | 66.20815 | 38 |
TTGGGGG | 32150 | 0.0 | 66.07999 | 39 |
TTTTGGG | 32300 | 0.0 | 64.39674 | 37 |
TGGGGGG | 35370 | 0.0 | 62.03206 | 40 |
GGGCCGG | 3620 | 0.0 | 61.481426 | 46 |
TTTTTGG | 33965 | 0.0 | 61.025723 | 36 |
GCCGGGG | 3565 | 0.0 | 60.965637 | 48 |
GGGGCCG | 3735 | 0.0 | 60.809658 | 45 |
GGGGGGT | 21500 | 0.0 | 60.808434 | 51 |
GGCCGGG | 3615 | 0.0 | 60.798496 | 47 |
CCGGGGA | 2480 | 0.0 | 60.253616 | 49 |
AGGGGGG | 40700 | 0.0 | 58.874893 | 70 |
TATGGGG | 1035 | 0.0 | 55.807026 | 38 |
GGGCCCC | 780 | 0.0 | 55.634674 | 9 |
TTTTTTG | 37545 | 0.0 | 54.907005 | 35 |