Basic Statistics
Measure | Value |
---|---|
Filename | HMT3KBGX7_n02_QG3380.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2365274 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGGG | 138749 | 5.866085705081103 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 34003 | 1.4375924311517396 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAGGGGGGGGGGGGGGGGGGGG | 8201 | 0.346725157423622 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGCG | 7311 | 0.30909738152958177 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGG | 5862 | 0.24783598010209387 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTGGGGGGGGGGG | 3091 | 0.13068253403199798 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGGTTA | 10695 | 0.0 | 68.56064 | 53 |
GGGTTAA | 10860 | 0.0 | 68.26022 | 54 |
GGTTAAA | 11065 | 0.0 | 67.50168 | 55 |
GGGGGTT | 11875 | 0.0 | 65.22579 | 52 |
TTGGGGG | 21010 | 0.0 | 64.79595 | 39 |
GTTAAAA | 12075 | 0.0 | 64.202065 | 56 |
TTTGGGG | 21135 | 0.0 | 63.901985 | 38 |
TGGGGGG | 23265 | 0.0 | 60.667133 | 40 |
TTTTGGG | 22230 | 0.0 | 59.71497 | 37 |
GGGGGGT | 14240 | 0.0 | 58.42269 | 51 |
AGGGGGG | 26440 | 0.0 | 57.796703 | 70 |
GCCGGGG | 2410 | 0.0 | 56.3502 | 48 |
GGCCGGG | 2445 | 0.0 | 56.25694 | 47 |
GGGCCGG | 2510 | 0.0 | 55.632015 | 46 |
GGGGCCG | 2545 | 0.0 | 55.555668 | 45 |
TTTTTGG | 24590 | 0.0 | 53.941708 | 36 |
CCGGGGA | 1865 | 0.0 | 53.48569 | 49 |
AAGGGGG | 28885 | 0.0 | 52.638977 | 69 |
AAAGGGG | 28940 | 0.0 | 52.406013 | 68 |
AAAAGGG | 29875 | 0.0 | 50.765858 | 67 |