Basic Statistics
Measure | Value |
---|---|
Filename | HMT3KBGX7_n02_QG3308.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2451779 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGGG | 131720 | 5.372425491857137 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 32015 | 1.3057865329623919 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAGGGGGGGGGGGGGGGGGGGG | 9190 | 0.3748298684343083 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGCC | 7760 | 0.31650487258435606 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTTGGGGGGGGCG | 5818 | 0.2372970810174979 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGG | 4857 | 0.19810105233791464 | No Hit |
GGGGGGGGGGGGGGGGGGGGGGGGGAAAAAATTTTTTTTGGGGGGGGGGG | 3329 | 0.1357789588702734 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGTTAA | 10255 | 0.0 | 68.285126 | 54 |
GGGGTTA | 10215 | 0.0 | 67.972885 | 53 |
GGTTAAA | 10420 | 0.0 | 67.60686 | 55 |
GGGGGTT | 11420 | 0.0 | 64.876465 | 52 |
TTGGGGG | 20075 | 0.0 | 63.80108 | 39 |
GTTAAAA | 11525 | 0.0 | 63.128902 | 56 |
TTTGGGG | 20135 | 0.0 | 63.12805 | 38 |
TGGGGGG | 21775 | 0.0 | 60.62174 | 40 |
GGGGGGT | 13375 | 0.0 | 59.05925 | 51 |
GGGGCCG | 2330 | 0.0 | 58.584873 | 45 |
TTTTGGG | 21585 | 0.0 | 58.172565 | 37 |
AGGGGGG | 25030 | 0.0 | 57.819416 | 70 |
GGGCCGG | 2395 | 0.0 | 56.40917 | 46 |
GGCCGGG | 2365 | 0.0 | 56.23677 | 47 |
GCCGGGG | 2365 | 0.0 | 54.909332 | 48 |
AAGGGGG | 27250 | 0.0 | 52.964466 | 69 |
AAAGGGG | 27490 | 0.0 | 52.331314 | 68 |
TTTTTGG | 24320 | 0.0 | 51.65089 | 36 |
AAAAGGG | 28340 | 0.0 | 50.6619 | 67 |
GGGGGCC | 2730 | 0.0 | 49.999985 | 44 |