HMT3KBGX7_n01_QG3481.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMT3KBGX7_n01_QG3481.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2926098
Sequences flagged as poor quality	0
Sequence length	76
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAACGGTTATCTCGTAT	233720	7.987428992467101	TruSeq Adapter, Index 9 (97% over 37bp)
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT	5167	0.17658328600067394	No Hit
CCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCC	3887	0.13283902316327068	No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG	3541	0.1210144021150351	No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT	3486	0.11913476582124044	No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC	3432	0.11728930473278748	No Hit
GCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGC	3396	0.11605899734048553	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	25270	67.171265	46
TATGCCG	25350	66.97768	48
GTATGCC	25330	66.971855	47
ATGCCGT	25485	66.57363	49
TCGTATG	25555	66.40731	45
CTCGTAT	25775	65.73412	44
CTGCTTG	25925	65.41785	59
TGCCGTC	25995	65.26862	50
GCCGTCT	26025	65.18217	51
TGCTTGA	26070	65.07752	60
TCTCGTA	26195	64.69463	43
ACGGTTA	25845	64.60345	36
CGGTTAT	25860	64.571785	37
GGTTATC	25930	64.517845	38
CCGTCTT	26370	64.355934	52
ATCTCGT	26320	64.3353	42
GTTATCT	26075	64.29439	39
TATCTCG	26280	64.22012	41
TCTGCTT	26555	63.904312	58
TTATCTC	26350	63.79606	40