HMT3KBGX7_n01_QG3389.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMT3KBGX7_n01_QG3389.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1651192
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATAACGCCATCTCGTAT	178469	10.808494711699185	TruSeq Adapter, Index 1 (97% over 39bp)
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT	2623	0.15885493631267594	No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT	2368	0.1434115475365675	No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG	1923	0.1164613200645352	No Hit
GCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGC	1777	0.10761922296135155	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	18880	68.167114	47
TATGCCG	18895	68.10066	48
CGTATGC	18935	67.96705	46
TCGTATG	18945	67.949646	45
ATGCCGT	18940	67.92244	49
TGCCGTC	19110	67.34264	50
CTGCTTG	19120	67.31554	59
CTCGTAT	19110	67.27138	44
GCCGTCT	19245	66.943016	51
TGCTTGA	19250	66.8771	60
TCTCGTA	19235	66.75941	43
ATCTCGT	19320	66.4818	42
GCCATCT	19080	66.37854	39
CCGTCTT	19400	66.37206	52
ACGCCAT	19225	65.97092	37
TCTGCTT	19535	65.83373	58
CGCCATC	19260	65.75818	38
TAACGCC	19330	65.727165	35
CATCTCG	19440	65.67535	41
GCTTGAA	19645	65.61951	61