HMT3KBGX7_n01_QG3322.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMT3KBGX7_n01_QG3322.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1797960
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGCTTAAATCTCGTAT	198258	11.0268304077955	TruSeq Adapter, Index 23 (97% over 38bp)
CTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCT	2639	0.14677745889786203	No Hit
CTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCT	2306	0.12825646844201205	No Hit
GGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGG	2015	0.11207145876437741	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	20920	67.95654	47
CGTATGC	20930	67.940796	46
TATGCCG	20945	67.91263	48
TCGTATG	20990	67.75949	45
ATGCCGT	21090	67.480774	49
CTGCTTG	21220	66.99953	59
CTCGTAT	21165	66.984276	44
GCCGTCT	21270	66.86406	51
TGCCGTC	21280	66.84723	50
CCGTCTT	21435	66.431015	52
TGCTTGA	21400	66.41778	60
TCTCGTA	21395	66.247826	43
TTAAATC	21290	65.90242	38
TCTGCTT	21615	65.79135	58
CTTAAAT	21405	65.69916	37
ATCTCGT	21565	65.694954	42
AATCTCG	21565	65.46774	41
GCTTAAA	21490	65.33074	36
GCTTGAA	21800	65.29543	61
CGCTTAA	21555	65.14998	35