FastQCFastQC Report
Sat 20 Oct 2018
HMNKTBGX7_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMNKTBGX7_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500672595
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAGGCC14042218228.04670824853116No Hit
ATCTTTAG11287161422.543996840889605No Hit
GGTCAATA10838697021.648272959697344No Hit
TCAGCCGT10506836620.985443790866963No Hit
GGGGGGGG164466133.2849037802838No Hit
CAGCGGCC6303310.12589684482331212No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)