HMNGTBGX2_n01_shrt_09r.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMNGTBGX2_n01_shrt_09r.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	12990706
Sequences flagged as poor quality	0
Sequence length	75
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGACTCTAGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGACGATGAC	29408	0.22637722691899886	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGAGTTCATGCGCTTCAAGGTGCGCAT	29203	0.2247991756568119	No Hit
ATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCC	22740	0.1750482229372291	No Hit
CTGTTACTACCCTACACTCATACTTGGATCACAGCCACTAGTAGCCTATGCTCCTAGTACATAGACACCCTACAG	20690	0.1592677103153593	No Hit
AGCAGATCTATCGATTCTAGCATGACTGGTGGACAGCAAATGGGTCGGGATCTGTACGACGATGACGATAAGGAT	17541	0.13502730336596025	No Hit
GTCGGGATCTGTACGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGGAGTTCATGCGCT	14463	0.11133344100005035	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGAGGTTAGATAGTAGGACAGGATACAT	13498	0.10390505335121894	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACTCTAG	12405	37.239254	5
GCTGACT	6065	36.2447	1
TACTCTA	6680	35.42921	4
CTGTTAC	8990	33.396076	1
ACTACCC	8950	33.03505	6
CTAGTTG	7250	32.498486	8
TCTAGTT	7910	31.095207	7
CTCTAGT	8025	30.308277	6
TACTACC	9785	30.11024	5
TACCCTA	9975	29.465044	8
GTTACTA	10090	29.439074	3
TGTACTC	8120	29.27366	2
GTACTCT	8225	28.77401	3
TTGTACT	8300	28.14793	1
CTACCCT	10620	27.870398	7
TGTTACT	10965	27.341665	2
TTACTAC	10885	27.320753	4
GACTCTA	8525	27.114042	4
CTGACTC	8205	26.868048	2
TAGTTGT	8670	26.85747	9