FastQCFastQC Report
Thu 25 Oct 2018
HMNG2BCX2_l01_n02_SMART_P1_Demulti.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMNG2BCX2_l01_n02_SMART_P1_Demulti.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCATGGCCTCCACCATGCTAGAAATTCCAATCGGTCTCCTATATGAAC13.7037037037037033No Hit
CTTTCCTGCGTTATCCCCTGATTCATTAATGCAGATCACGATCCTTTCTG13.7037037037037033No Hit
CTTTTGAGATCTGCTGCTTGTCCTATTCCCTCAGAATTTTGATGCCTGAA13.7037037037037033No Hit
GAAATACACAGATCCCTGAGATAGGTCCCTCACTCATTAAGCATTGGTAA13.7037037037037033No Hit
TCCTTGAAGAATCCCACCCAGGTATCTTTGAGAACTCATGCCTTGAAACA13.7037037037037033No Hit
AAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTT13.7037037037037033No Hit
CACGCACGATTACCATAAAAGGCAATGGCTGCGGCTCGCCGCGCCTCGAC13.7037037037037033No Hit
CCGTAAGTTATGTAACGCGGAACTCCATATATGGGCTATGAACTAATGAC13.7037037037037033No Hit
CTGCTTGAGTGCTTTTGAGATCTGCTGCTTGTCCTATTCCCTCAGAATTT13.7037037037037033No Hit
ACATACTGGTGGGATGGTGTCCAATCCTCCGACGATTTTGCCCTCATAGT13.7037037037037033No Hit
ATCCTGTTTACATTTTGAAATGGTTTGTCATTGGGAATGCTTCCATTTGG13.7037037037037033No Hit
GTTCAACATGCTAAGTACGGTTTTAGGAGTCTCGATACTGAATCTTGGGC13.7037037037037033No Hit
CTACAGGACCTGCAAATTAGTGGGAATCAACATGAGCAAAAAGAAGTCCT13.7037037037037033No Hit
TTTCCTATCCCCGCCCTCCTCCACCCACCTACCTCCGGAAAAAGAGTTGC13.7037037037037033No Hit
GTGTTGTCCCCAGTGATTGTGAAAGAAAGCTCAGTGTCTTGTGAATTAGT13.7037037037037033No Hit
ACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTA13.7037037037037033No Hit
TCTGTAGTCTTTGATGAACAATTGGAGAGCCATCTGGGCTGTTGCTGGTC13.7037037037037033No Hit
GTTCAGAGTTCCTCAACAGGTGGAATATGCGACAGTCCTCATCAGATCCT13.7037037037037033No Hit
GTGTAGCCGTAGTTAGGCCACCACTTCAAGAAGTCTGTAGCACCGCCTAC13.7037037037037033No Hit
TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCT13.7037037037037033No Hit
GAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTA13.7037037037037033No Hit
CTATTCAGCTTCCCATTGATTTGGTTGATTGCTGCTTGAGTGCTTTTGAG13.7037037037037033No Hit
AACTGATACACAGCAACCCGACGATAAACAGCAGCACGGCAATAAACTGG13.7037037037037033No Hit
AAAGCCGGAAAAATATCACAACCAGAGTAAATCCGAATCTAATGTTCCTA13.7037037037037033No Hit
CTTGAACAGTCTGGACTCCCGGTTGGGGGTAATGAAAAGAAGGCCAAACT13.7037037037037033No Hit
GGCCAGAAGAAAGGGATATTAATCCTCTTCCATCCCAGAGGCCGGGACCT13.7037037037037033No Hit
CCCTTATACTGGAGATCCTCCATACAGCCATGGAACAGGAACAGGGTACA13.7037037037037033No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)