FastQCFastQC Report
Mon 17 Jul 2017
HMMNMAFXX_n01_498h4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMMNMAFXX_n01_498h4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1311875
Sequences flagged as poor quality0
Sequence length50
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG2550.026.74433311
GATCGGA2700.022.817641
ACACGTC3000.022.73268313
GTTCCGT3000.022.73268335
AGGGGGG3000.022.0027261
AGTTCCG3350.021.67102234
CGTCTGA3250.021.6609216
AGTCACA3400.021.35233128
CACACGT3200.021.31189212
TCCAGTC3450.021.04287525
CCGTATC3150.020.95258138
GTCACAG3550.020.45011929
TATCTCG3250.020.30865941
ACGTCTG3550.019.8304215
CGTATCT3250.019.63170439
CAGTCAC3700.019.02648427
AGCACAC3750.018.77279710
CCAGTCA3650.018.68439726
ATCTCGT3600.018.33420842
CACGTCT3800.017.94685614
Produced by FastQC (version 0.11.2)