HMMGYBGX3_n01_atacseq_1000_5_ctr_root.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMMGYBGX3_n01_atacseq_1000_5_ctr_root.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88385120
Sequences flagged as poor quality	0
Sequence length	75
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	6095624	6.896663148729107	RNA PCR Primer, Index 17 (96% over 28bp)
TCTTATACACATCTCCGAGCCCACGAGACAGGCAGAAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGG	162874	0.18427762501199296	TruSeq Adapter, Index 12 (96% over 27bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGGGGG	670890	65.71501	69
TATGCCG	719770	61.866554	43
ATGCCGT	721190	61.788395	44
GCCGTCT	721085	61.755047	46
CGTATGC	721680	61.75481	41
AAAGGGG	713880	61.740383	68
GTATGCC	721665	61.731163	42
TGCCGTC	722790	61.596565	45
TCGTATG	725975	61.39229	40
CTCGTAT	724225	61.165356	39
CCGTCTT	731840	60.85622	47
CTGCTTG	733875	60.730118	54
TCTCGTA	730640	60.601837	38
ATCTCGT	736060	60.17648	37
CGTCTTC	743625	59.93206	48
AATCTCG	742075	59.70435	36
CTTCTGC	746920	59.687695	51
TGCTTGA	748540	59.574753	55
GCTTGAA	750560	59.45488	56
AAAAGGG	743445	59.35466	67