HMM52AFXY_n01_776-2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMM52AFXY_n01_776-2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8338158
Sequences flagged as poor quality	0
Sequence length	76
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTAGAGATCTCGTATG	77248	0.9264396285126764	TruSeq Adapter, Index 3 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTGCTTG	13880	45.038765	58
GCCGTCT	14085	44.504036	50
TGCCGTC	14405	43.588287	49
CCGTCTT	14790	42.477303	51
TGCTTGA	14925	42.00256	59
TATGCCG	14990	41.90981	47
ATGCCGT	15110	41.64721	48
GCTTGAA	15660	40.321743	60
GTATGCC	15640	40.235165	46
GATCTCG	15475	39.30695	40
CTCGTAT	16060	38.81246	43
CGTAGAG	16290	38.521126	34
AGTCACG	16675	38.093246	29
CGTATGC	16565	38.030663	45
CACGTAG	16615	37.999336	32
ATCTCGT	16150	37.750774	41
GTCACGT	16830	37.617653	30
CGTCTTC	16760	37.588856	52
AGATCTC	16485	36.876804	39
TCGTATG	17045	36.83649	44