[2023-11-02 17:12:32,541] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-11-02 17:12:32,541] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-11-02 17:12:32,541] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-11-02 17:12:32,544] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-11-02 17:12:32,544] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-11-02 17:12:32,544] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HMLTGDMXY/merged [2023-11-02 17:12:33,114] multiqc [WARNING] MultiQC Version v1.17 now available! [2023-11-02 17:12:33,114] multiqc [INFO ] This is MultiQC v1.9 [2023-11-02 17:12:33,114] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HMLTGDMXY/merged [2023-11-02 17:12:33,114] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HMLTGDMXY/merged [2023-11-02 17:12:33,114] multiqc [INFO ] Template : default [2023-11-02 17:12:33,114] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-11-02 17:12:33,114] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HMLTGDMXY/merged [2023-11-02 17:12:33,115] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-11-02 17:12:33,115] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-39558409/tmpaps45ye1 [2023-11-02 17:12:33,231] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-021_fastqc.html [2023-11-02 17:12:33,234] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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[2023-11-02 17:12:40,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-065_fastqc.html [2023-11-02 17:12:40,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-065_fastqc.html [2023-11-02 17:12:41,021] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-001_fastqc.html [2023-11-02 17:12:41,023] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-001_fastqc.html [2023-11-02 17:12:41,090] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-015_fastqc.html [2023-11-02 17:12:41,091] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-015_fastqc.html [2023-11-02 17:12:41,175] multiqc 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[2023-11-02 17:12:45,648] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-014_fastqc.html [2023-11-02 17:12:45,650] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-014_fastqc.html [2023-11-02 17:12:45,705] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-004_fastqc.html [2023-11-02 17:12:45,707] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-004_fastqc.html [2023-11-02 17:12:45,768] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-016_fastqc.html [2023-11-02 17:12:45,770] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-016_fastqc.html [2023-11-02 17:12:45,845] multiqc 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[2023-11-02 17:12:49,255] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-091_fastqc.html [2023-11-02 17:12:49,312] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-078_fastqc.html [2023-11-02 17:12:49,314] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-078_fastqc.html [2023-11-02 17:12:49,401] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-015_fastqc.html [2023-11-02 17:12:49,403] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-015_fastqc.html [2023-11-02 17:12:49,465] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-008_fastqc.html [2023-11-02 17:12:49,467] multiqc 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[2023-11-02 17:12:50,576] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-085_fastqc.html [2023-11-02 17:12:50,578] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-085_fastqc.html [2023-11-02 17:12:50,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-029_fastqc.html [2023-11-02 17:12:50,630] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-029_fastqc.html [2023-11-02 17:12:50,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-028_fastqc.html [2023-11-02 17:12:50,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-028_fastqc.html [2023-11-02 17:12:50,764] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-004_fastqc.html [2023-11-02 17:12:50,765] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-004_fastqc.html [2023-11-02 17:12:50,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-069_fastqc.html [2023-11-02 17:12:50,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-069_fastqc.html [2023-11-02 17:12:50,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-041_fastqc.html [2023-11-02 17:12:50,900] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-041_fastqc.html [2023-11-02 17:12:50,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-012_fastqc.html [2023-11-02 17:12:50,996] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-012_fastqc.html [2023-11-02 17:12:51,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-055_fastqc.html [2023-11-02 17:12:51,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-055_fastqc.html [2023-11-02 17:12:51,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-016_fastqc.html [2023-11-02 17:12:51,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-016_fastqc.html [2023-11-02 17:12:51,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-007_fastqc.html [2023-11-02 17:12:51,189] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-007_fastqc.html [2023-11-02 17:12:51,297] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-059_fastqc.html [2023-11-02 17:12:51,299] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-059_fastqc.html [2023-11-02 17:12:51,344] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-023_fastqc.html [2023-11-02 17:12:51,346] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-023_fastqc.html [2023-11-02 17:12:51,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-033_fastqc.html [2023-11-02 17:12:51,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-033_fastqc.html [2023-11-02 17:12:51,478] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-027_fastqc.html [2023-11-02 17:12:51,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-027_fastqc.html [2023-11-02 17:12:51,542] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-036_fastqc.html [2023-11-02 17:12:51,544] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-036_fastqc.html [2023-11-02 17:12:51,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-037_fastqc.html [2023-11-02 17:12:51,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-037_fastqc.html [2023-11-02 17:12:51,698] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-019_fastqc.html [2023-11-02 17:12:51,700] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-019_fastqc.html [2023-11-02 17:12:51,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-058_fastqc.html [2023-11-02 17:12:51,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-058_fastqc.html [2023-11-02 17:12:51,828] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-062_fastqc.html [2023-11-02 17:12:51,830] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-062_fastqc.html [2023-11-02 17:12:51,899] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-018_fastqc.html [2023-11-02 17:12:51,901] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-018_fastqc.html [2023-11-02 17:12:51,982] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-070_fastqc.html [2023-11-02 17:12:51,984] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-070_fastqc.html [2023-11-02 17:12:52,033] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-045_fastqc.html [2023-11-02 17:12:52,035] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-045_fastqc.html [2023-11-02 17:12:52,094] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-035_fastqc.html [2023-11-02 17:12:52,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-035_fastqc.html [2023-11-02 17:12:52,141] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-051_fastqc.html [2023-11-02 17:12:52,143] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-051_fastqc.html [2023-11-02 17:12:52,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-002_fastqc.html [2023-11-02 17:12:52,201] multiqc [DEBUG ] File ignored by longranger/invocation because it 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limit: HMLTGDMXY_n01_MHC-053_fastqc.html [2023-11-02 17:12:52,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-047_fastqc.html [2023-11-02 17:12:52,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-047_fastqc.html [2023-11-02 17:12:52,555] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-075_fastqc.html [2023-11-02 17:12:52,557] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-075_fastqc.html [2023-11-02 17:12:52,609] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-027_fastqc.html [2023-11-02 17:12:52,611] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-027_fastqc.html [2023-11-02 17:12:52,670] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-017_fastqc.html [2023-11-02 17:12:52,672] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-017_fastqc.html [2023-11-02 17:12:52,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-037_fastqc.html [2023-11-02 17:12:52,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-037_fastqc.html [2023-11-02 17:12:52,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-091_fastqc.html [2023-11-02 17:12:52,800] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-091_fastqc.html [2023-11-02 17:12:52,861] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-032_fastqc.html [2023-11-02 17:12:52,863] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-032_fastqc.html [2023-11-02 17:12:52,925] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-082_fastqc.html [2023-11-02 17:12:52,927] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-082_fastqc.html [2023-11-02 17:12:53,060] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-032_fastqc.html [2023-11-02 17:12:53,062] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-032_fastqc.html [2023-11-02 17:12:53,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-002_fastqc.html [2023-11-02 17:12:53,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-002_fastqc.html [2023-11-02 17:12:53,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-006_fastqc.html [2023-11-02 17:12:53,246] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_KHC-006_fastqc.html [2023-11-02 17:12:53,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-007_fastqc.html [2023-11-02 17:12:53,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-007_fastqc.html [2023-11-02 17:12:53,415] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-024_fastqc.html [2023-11-02 17:12:53,417] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MTH-024_fastqc.html [2023-11-02 17:12:53,479] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-004_fastqc.html [2023-11-02 17:12:53,480] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-004_fastqc.html [2023-11-02 17:12:53,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-034_fastqc.html [2023-11-02 17:12:53,551] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n01_MHC-034_fastqc.html [2023-11-02 17:12:53,601] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-086_fastqc.html [2023-11-02 17:12:53,603] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MHC-086_fastqc.html [2023-11-02 17:12:53,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-016_fastqc.html [2023-11-02 17:12:53,676] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_KHC-016_fastqc.html [2023-11-02 17:12:53,729] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-009_fastqc.html [2023-11-02 17:12:53,731] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-009_fastqc.html [2023-11-02 17:12:53,798] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-021_fastqc.html [2023-11-02 17:12:53,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HMLTGDMXY_n02_MTH-021_fastqc.html [2023-11-02 17:12:54,313] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-02 17:12:54,314] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-11-02 17:12:54,322] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-11-02 17:12:54,390] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 149 samples (table) [2023-11-02 17:12:54,400] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-11-02 17:12:54,404] multiqc [DEBUG ] No samples found: conpair [2023-11-02 17:12:54,408] multiqc [DEBUG ] No samples found: peddy [2023-11-02 17:12:54,413] multiqc [DEBUG ] No samples found: somalier [2023-11-02 17:12:54,418] multiqc [DEBUG ] No samples found: methylQA [2023-11-02 17:12:54,425] multiqc [DEBUG ] No samples found: mosdepth [2023-11-02 17:12:54,430] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-11-02 17:12:54,433] multiqc [DEBUG ] No samples found: qualimap [2023-11-02 17:12:54,437] multiqc [DEBUG ] No samples found: preseq [2023-11-02 17:12:54,442] multiqc [DEBUG ] No samples found: quast [2023-11-02 17:12:54,446] multiqc [DEBUG ] No samples found: qorts [2023-11-02 17:12:54,450] multiqc [DEBUG ] No samples found: rna_seqc [2023-11-02 17:12:54,455] multiqc [DEBUG ] No samples found: rockhopper [2023-11-02 17:12:54,459] multiqc [DEBUG ] No samples found: rsem [2023-11-02 17:12:54,469] multiqc [DEBUG ] No samples found: rseqc [2023-11-02 17:12:54,473] multiqc [DEBUG ] No samples found: busco [2023-11-02 17:12:54,478] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-11-02 17:12:54,482] multiqc [DEBUG ] No samples found: disambiguate [2023-11-02 17:12:54,486] multiqc [DEBUG ] No samples found: supernova [2023-11-02 17:12:54,498] multiqc [DEBUG ] No samples found: deeptools [2023-11-02 17:12:54,502] multiqc [DEBUG ] No samples found: sargasso [2023-11-02 17:12:54,507] multiqc [DEBUG ] No samples found: verifybamid [2023-11-02 17:12:54,511] multiqc [DEBUG ] No samples found: mirtrace [2023-11-02 17:12:54,519] multiqc [DEBUG ] No samples found: happy [2023-11-02 17:12:54,523] multiqc [DEBUG ] No samples found: mirtop [2023-11-02 17:12:54,529] multiqc [DEBUG ] No samples found: homer [2023-11-02 17:12:54,533] multiqc [DEBUG ] No samples found: macs2 [2023-11-02 17:12:54,537] multiqc [DEBUG ] No samples found: theta2 [2023-11-02 17:12:54,542] multiqc [DEBUG ] No samples found: snpeff [2023-11-02 17:12:54,548] multiqc [DEBUG ] No samples found: gatk [2023-11-02 17:12:54,552] multiqc [DEBUG ] No samples found: htseq [2023-11-02 17:12:54,557] multiqc [DEBUG ] No samples found: bcftools [2023-11-02 17:12:54,562] multiqc [DEBUG ] No samples found: featureCounts [2023-11-02 17:12:54,567] multiqc [DEBUG ] No samples found: fgbio [2023-11-02 17:12:54,579] multiqc [DEBUG ] No samples found: dragen [2023-11-02 17:12:54,584] multiqc [DEBUG ] No samples found: dedup [2023-11-02 17:12:54,588] multiqc [DEBUG ] No samples found: damageprofiler [2023-11-02 17:12:54,610] multiqc [DEBUG ] No samples found: biobambam2 [2023-11-02 17:12:54,614] multiqc [DEBUG ] No samples found: mtnucratio [2023-11-02 17:12:54,616] multiqc [DEBUG ] No samples found: picard [2023-11-02 17:12:54,620] multiqc [DEBUG ] No samples found: prokka [2023-11-02 17:12:54,625] multiqc [DEBUG ] No samples found: samblaster [2023-11-02 17:12:54,633] multiqc [DEBUG ] No samples found: samtools [2023-11-02 17:12:54,637] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-11-02 17:12:54,642] multiqc [DEBUG ] No samples found: bamtools [2023-11-02 17:12:54,646] multiqc [DEBUG ] No samples found: jellyfish [2023-11-02 17:12:54,653] multiqc [DEBUG ] No samples found: vcftools [2023-11-02 17:12:54,657] multiqc [DEBUG ] No samples found: longranger [2023-11-02 17:12:54,661] multiqc [DEBUG ] No samples found: stacks [2023-11-02 17:12:54,666] multiqc [DEBUG ] No samples found: varscan2 [2023-11-02 17:12:54,679] multiqc [DEBUG ] No samples found: bbmap [2023-11-02 17:12:54,683] multiqc [DEBUG ] No samples found: bismark [2023-11-02 17:12:54,687] multiqc [DEBUG ] No samples found: biscuit [2023-11-02 17:12:54,692] multiqc [DEBUG ] No samples found: hicexplorer [2023-11-02 17:12:54,696] multiqc [DEBUG ] No samples found: hicup [2023-11-02 17:12:54,700] multiqc [DEBUG ] No samples found: hicpro [2023-11-02 17:12:54,704] multiqc [DEBUG ] No samples found: salmon [2023-11-02 17:12:54,708] multiqc [DEBUG ] No samples found: kallisto [2023-11-02 17:12:54,713] multiqc [DEBUG ] No samples found: slamdunk [2023-11-02 17:12:54,717] multiqc [DEBUG ] No samples found: star [2023-11-02 17:12:54,721] multiqc [DEBUG ] No samples found: hisat2 [2023-11-02 17:12:54,726] multiqc [DEBUG ] No samples found: tophat [2023-11-02 17:12:54,730] multiqc [DEBUG ] No samples found: bowtie2 [2023-11-02 17:12:54,734] multiqc [DEBUG ] No samples found: bowtie1 [2023-11-02 17:12:54,738] multiqc [DEBUG ] No samples found: snpsplit [2023-11-02 17:12:54,742] multiqc [DEBUG ] No samples found: kat [2023-11-02 17:12:54,746] multiqc [DEBUG ] No samples found: leehom [2023-11-02 17:12:54,750] multiqc [DEBUG ] No samples found: adapterRemoval [2023-11-02 17:12:54,755] multiqc [DEBUG ] No samples found: clipandmerge [2023-11-02 17:12:54,759] multiqc [DEBUG ] No samples found: cutadapt [2023-11-02 17:12:54,763] multiqc [DEBUG ] No samples found: flexbar [2023-11-02 17:12:54,768] multiqc [DEBUG ] No samples found: kaiju [2023-11-02 17:12:54,772] multiqc [DEBUG ] No samples found: kraken [2023-11-02 17:12:54,776] multiqc [DEBUG ] No samples found: malt [2023-11-02 17:12:54,781] multiqc [DEBUG ] No samples found: trimmomatic [2023-11-02 17:12:54,785] multiqc [DEBUG ] No samples found: sickle [2023-11-02 17:12:54,789] multiqc [DEBUG ] No samples found: skewer [2023-11-02 17:12:54,793] multiqc [DEBUG ] No samples found: sortmerna [2023-11-02 17:12:54,797] multiqc [DEBUG ] No samples found: biobloomtools [2023-11-02 17:12:54,801] multiqc [DEBUG ] No samples found: fastq_screen [2023-11-02 17:12:54,806] multiqc [DEBUG ] No samples found: afterqc [2023-11-02 17:12:54,810] multiqc [DEBUG ] No samples found: fastp [2023-11-02 17:13:47,607] multiqc.modules.fastqc.fastqc [INFO ] Found 298 reports [2023-11-02 17:14:17,873] multiqc [DEBUG ] No samples found: pycoqc [2023-11-02 17:14:17,877] multiqc [DEBUG ] No samples found: minionqc [2023-11-02 17:14:17,882] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-11-02 17:14:17,886] multiqc [DEBUG ] No samples found: clusterflow [2023-11-02 17:14:17,891] multiqc [DEBUG ] No samples found: bcl2fastq [2023-11-02 17:14:17,895] multiqc [DEBUG ] No samples found: interop [2023-11-02 17:14:17,900] multiqc [DEBUG ] No samples found: ivar [2023-11-02 17:14:17,904] multiqc [DEBUG ] No samples found: flash [2023-11-02 17:14:17,909] multiqc [DEBUG ] No samples found: seqyclean [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-11-02 17:14:17,909] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-11-02 17:14:17,910] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-11-02 17:14:18,248] multiqc [INFO ] Compressing plot data [2023-11-02 17:14:18,349] multiqc [INFO ] Report : multiqc_report.html [2023-11-02 17:14:18,349] multiqc [INFO ] Data : multiqc_data [2023-11-02 17:14:18,349] multiqc [DEBUG ] Moving data file from '/state/partition1/job-39558409/tmpaps45ye1/multiqc_data' to '/scratch/gencore/logs/html/HMLTGDMXY/merged/multiqc_data' [2023-11-02 17:14:18,488] multiqc [INFO ] MultiQC complete