FastQCFastQC Report
Thu 2 Nov 2023
HMLTGDMXY_n02_MTH-019.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMLTGDMXY_n02_MTH-019.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39244068
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCCTAAGGGATAG943540.24042869357988067No Hit
AGAAGACCCTGTTGAGCTTGACTCTAGTCTGGCACGGTGAAGAGACATGA580110.14782106686799135No Hit
GTCTACTTGACATTTTTATTATAAGGATAACTACGGAAAAGCTGTAGCTA546930.13936628588045458No Hit
CTTGACTCTAGTCTGGCACGGTGAAGAGACATGAGAGGTGTAGAATAAGT445470.11351269700174815No Hit
CTCTAGTCTGGCACGGTGAAGAGACATGAGAGGTGTAGAATAAGTGGGAG422840.10774622039692724No Hit
GTTGGTTCAGACAATTGGTACAGCAATTGGTTGACAAACCAGTGTTGCGA419830.10697922549721399No Hit
GGAGTCTAGCAAATGTGCAAGTGTATATGATTCTTTAAACATTTCTCTTT408790.10416606147966108No Hit
GTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGA399480.1017937284177573No Hit
GTTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCATTTAC398750.10160771304340824No Hit
GGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGG395640.10081523658556499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)