FastQCFastQC Report
Thu 2 Nov 2023
HMLTGDMXY_n02_MHC-069.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMLTGDMXY_n02_MHC-069.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58044788
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCCTAAGGGATAG3137310.540498140849442No Hit
GCTCAAACGGTTAATCCTTCGTTTGGTGCAAGCCTTTCGACGGAATTGTC1832750.31574755686936096No Hit
GGTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCCTAAGGGATA1134910.1955231536033864No Hit
GTTTTCTTTGCACTTTACCTTTATAACAAACCTTGGAATCAATTTACTTG1006700.1734350377849601No Hit
CTTCGTTTGGTGCAAGCCTTTCGACGGAATTGTCGTTGAATTATTCCATG983930.16951220495456026No Hit
GGGTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCCTAAGGGAT892390.1537416244848719No Hit
GGCAAATCCGCCGAATTTAAGCATATAATTAAGCGGAAGAAAAGAAAATA854450.14720529257510598No Hit
GTTGGTTCAGACAATTGGTACAGCAATTGGTTGACAAACCAGTGTTGCGA801430.13807096685407827No Hit
GGGAAATCGTTTTCCTTGACCTATTCTCAAACTCCCAATAGGTAAAAAGG795870.13711308584674303No Hit
CTCAAACGGTTAATCCTTCGTTTGGTGCAAGCCTTTCGACGGAATTGTCG749690.12915716050164575No Hit
CAGTAATCCAACTTGGTACGAGAGGATTAGTTGGTTCAGACAATTGGTAC730100.12578218047759945No Hit
GTTTGACTGGGGCGGTACATCTGTTAAATATTAACGCAGATGTCCAAAGA701620.12087562452635713No Hit
GTTGAATTATTCCATGAATGCCTTTAATTTGAGCAAAGTGAGCAGGAATG680170.11718020229482101No Hit
CGGCGAGTGAACAAGGACCAGCTCAAACGGTTAATCCTTCGTTTGGTGCA671430.11567446848113219No Hit
AGGGTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCCTAAGGGA669810.11539537365525393No Hit
GTGGAGAAGGGTTTCTTGTCAACTGTGATTGAACAAGAGTTAGCCGCTCC650300.11203417609174487No Hit
GCAAGCCTTTCGACGGAATTGTCGTTGAATTATTCCATGAATGCCTTTAA643130.11079892306609855No Hit
GTTCATTTTATTTTTTGTTTTGTAGCAATAGTAATTCGTTTTTATGAATT636710.10969288060798843No Hit
CAAGGACCAGCTCAAACGGTTAATCCTTCGTTTGGTGCAAGCCTTTCGAC625940.10783741685816821No Hit
GGAATGCTTCCCCATAGAGGGTGAAAGGCCCATAGTTCGTTTTAATTTAT611830.10540653538091999No Hit
GCTAAGTCTGTTGGATAATGGCTGAACGCCTCTTAAGCCAGAAACCATGC607920.10473291762216445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)