FastQCFastQC Report
Mon 29 Oct 2018
HMLHWBGX7_n02_HK_S26.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMLHWBGX7_n02_HK_S26.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1190
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCATCATATCAAACACCGTGGATCTTAACAACGGGGTCAACAACTCCA30.25210084033613445No Hit
TAAAAATTCACATATATAGCGCTCGGTTTGTGTACATTTTCATGCTCACT30.25210084033613445No Hit
AATTCATATAACCCTGCAGACTTTTAAACATCATTCAATCAAAAGGCAAT20.16806722689075632No Hit
GTACACTAAATGTTCGTTCACAGTCACTTGTATGCACTGTGGATGTGTTG20.16806722689075632No Hit
TGCTAAAATGATGTGAAAGAGAGAAGTTTGAAAATCACTGGATCATCGTC20.16806722689075632No Hit
CTATTTACCAGGAGGGGGACCGGTGCATTTGGTAGGGGGACAGGTACTTT20.16806722689075632No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20.16806722689075632No Hit
CCTCTATAAAGTGACCACCTCTCTATTGTGACAATTTGGTCAAGTGACTA20.16806722689075632No Hit
CCAATAGATTATCACATTTAAAAATACGATCACGAAAATTAACAAGTGAT20.16806722689075632No Hit
ATATATGGAGAGTGTTGGGATGGTATGAAATTGACTTCAAACCATATGAT20.16806722689075632No Hit
GGATTATGAAAGCCATTAAGTAGTACAATGAAATACAGTAGAACCTATCC20.16806722689075632No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)