FastQCFastQC Report
Fri 12 Feb 2021
HMLGTAFX2_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMLGTAFX2_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5925689
Sequences flagged as poor quality0
Sequence length149
%GC67

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG136764323.079898388187434No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68326711.530591632466706No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG665551.1231605303619545No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACA266450.44965235266312487No Hit
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACTGTCTCTTATACACA64940.10959063157043847No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)