FastQCFastQC Report
Fri 12 Feb 2021
HMLGTAFX2_n01_QG2080.mRNA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMLGTAFX2_n01_QG2080.mRNA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15147205
Sequences flagged as poor quality0
Sequence length149
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGTCAGATAATCGG998790.6593889763821115No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGTCAGATAATCTC801300.5290084870443095No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGTCAGATAATCGC732570.4836337793011978No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGTCAGATAATCTG377940.2495113785018424No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)