FastQCFastQC Report
Mon 1 Jul 2019
HMKHTBGXB_n01_umtu075_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMKHTBGXB_n01_umtu075_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8319029
Sequences flagged as poor quality0
Sequence length151
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATAAT455000.07.34410523
TAATAAG132100.06.58406076
ATAATAG163100.06.39917476
ATAATAA587850.06.27682162
AATAATA662000.05.9483991
ATTATTA411550.05.0220441
Produced by FastQC (version 0.11.5)