FastQCFastQC Report
Mon 1 Jul 2019
HMKHTBGXB_n01_umtu041_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMKHTBGXB_n01_umtu041_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6990776
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAATAAT397300.06.8808171
ATATAAG132050.06.80624966
ATAATAA452350.06.3616313
GCCGTCT22302.093113E-66.176136145
ATAATAG152000.05.8652456
AATAATA511350.05.85484552
TATATAA444650.05.8356515
TATGCCG23854.0227686E-55.4708176145
TATAAGG79550.05.28460367
TCTCGTA30702.9084276E-65.194604145
TGGGGGG42303.983587E-95.1405025
Produced by FastQC (version 0.11.5)