FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_H1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_H1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8992622
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGGACG12500.016.7242681
CCGGACA17800.016.6896551
GCCCGAA13000.015.9117541
AAACGAA15750.015.5087211
GGGCTAC14300.015.4654871
GGGACCT11800.015.3852831
AAACCCA16350.015.3433671
TGCGGAG10950.015.169283
AGCGCCA19750.015.0418141
AATGGAA18400.014.9494681
AAACGCT15450.014.8840591
AGAAAAG6950.014.8780213
GAAGCCC19950.014.8358681
TGCGACG14150.014.6963311
GGGATCC17400.014.6704121
CATGACG12850.014.6379618
GAACGAG10250.014.5954383
GAGACCC18800.014.5728691
GGAGAAC15950.014.4864561
ATGGGAG13850.014.4585651
Produced by FastQC (version 0.11.5)