FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_H1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_H1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7852794
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA17150.017.2577251
GCCCGAA11900.016.087841
GGGCTAC12600.015.7180011
AGCCACG14350.015.4879841
GAAAAGA6450.015.3491434
GGGACCT11600.015.2708531
AAACGCT13750.015.2035961
CTGGACG11950.015.1918761
ATACCGA13300.015.0561921
GAAGCCC16050.014.9443441
GAGACCC15900.014.8085331
CTCGAGG14800.014.7940381
CTGGCAG14450.014.771661
GGCACGT13450.014.6428681
CATGACG11000.014.5993628
GGGATCC15900.014.393341
CCCGAAG13000.014.3880191
TTAATCC20800.014.3351211
GAACGAG9850.014.2947933
TATATCC16550.014.2934111
Produced by FastQC (version 0.11.5)