FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_G1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_G1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7732402
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA14850.017.4121821
GAGACCC15950.016.3493121
ATGGGAG12000.015.7709911
TGCGACG14200.015.4197231
ATACCGA13650.015.3155551
GCCCGAA9850.015.1919841
CTGGACG11250.015.1597131
AAACCCA15300.014.9583511
AATGGAA15050.014.9143891
GGGCCAT13850.014.856061
TTGACCC15350.014.6945841
TGGAACT14100.014.5926541
GAAGCCC17350.014.5227151
CCCGAAG11750.014.5146181
GGTGGAA7050.014.5096447
AGGCTGC14800.014.4972191
AACGGGA8200.014.4917791
GGGATCC13750.014.4839731
AGCCACG16950.014.4759461
GCGGAAA9350.014.4745571
Produced by FastQC (version 0.11.5)