FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_G1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_G1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7310904
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA15200.017.0112441
CTGGACG11400.016.2149721
GCCCGAA9950.016.0345481
GAAAAGA6250.015.6639024
CATGACG9550.015.31854258
GAAGCCC16200.015.2819681
GAGACCC13300.015.056761
GGGCTAC9750.015.0092441
AATGGAA15750.014.9501311
GGGATCC14050.014.8012121
TGGAACT13550.014.778961
AGTAAAC12000.014.7575358
CGAAAAG7400.014.7162253
AAACGAA14000.014.6968871
TTAATCC19100.014.6898921
AAACCCA12900.014.670691
TGCGACG13750.014.6440151
CTCGAGG14150.014.618851
GAACGAG9050.014.5856453
GTGCTGG12050.014.4271941
Produced by FastQC (version 0.11.5)