FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_E1_3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_E1_3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9423760
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA20450.017.9169331
GCCCGAA13950.017.5102181
GGGCTAC14550.016.2587911
CTGGACG12500.015.9324041
GCGACGA6800.015.6915172
AGCCACG18950.015.3868391
TCGGGAC12550.015.3428871
AATGGAA19850.015.298941
AAACGAA15050.015.1337521
AGGGAAG9450.015.1324433
GGGACCT13800.015.0693841
ATGGGAG15750.015.0200251
GGGATCC18900.014.903591
GGGATGA11750.014.7955791
TTGACCC17850.014.7940061
TGCGACG16300.014.7157241
GAAAAGA8100.014.6667524
AACGGGA10700.014.6021671
TGATGAG13650.014.5862433
GAAGCCC21550.014.5515871
Produced by FastQC (version 0.11.5)