FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_E1_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_E1_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7466334
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA14450.016.9799751
GCCCGAA9800.016.3918061
GAAGCCC14950.015.6025191
AGGGAAG7450.015.50324253
GGGCTAC11700.015.3285751
AATGGAA16850.015.0838481
ATGGGAG11850.015.0416931
CTGGCAG14150.015.0072431
AACCTGA12100.014.8218471
AGCCACG15600.014.8113531
AAACGCT13400.014.7797731
CTGGACG12150.014.7608511
GAGACCC15550.014.6467071
AAACGAA13600.014.6433251
GTGGAAC8350.014.6221588
CATGACG12400.014.5477948
ACGCACG13600.014.4815211
AGCGCCA16900.014.4532771
TCGGGAC9400.014.3971771
TGGGCTG12050.014.3354951
Produced by FastQC (version 0.11.5)