FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_514hpf_E1_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_514hpf_E1_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7294521
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGACA15500.017.6745031
GACCCCA6950.015.51102353
GAAGCCC16500.015.4697611
GGGCTAC11050.015.2338161
GCCCGAA10250.015.1347351
GAACGAG7750.015.0453863
GAGACCC14700.015.0438251
TGGAACT13300.014.9729191
GGGACCT10100.014.9237771
CTGGCAG13550.014.8590611
CTGGACG10650.014.7729091
AAACGAA12950.014.6979211
AGGCGGA2550.014.66608110
TCGCCGA8050.014.62023458
GGGCCAT12950.014.6129621
AGTAAAC11350.014.5365668
AAACCCA14250.014.5151841
GGGATCC13600.014.4808381
GCGGAAA9650.014.4795811
TTGACCC13850.014.4577671
Produced by FastQC (version 0.11.5)