FastQCFastQC Report
Tue 13 Aug 2019
HMJY2BGX7_n01_dpErk_WE_16.5hpf_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMJY2BGX7_n01_dpErk_WE_16.5hpf_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61919801
Sequences flagged as poor quality0
Sequence length28
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCCCGA376100.020.2146787
TCCCGAG413850.019.5272738
CCCGAGT277350.019.1481869
CCGGACA188950.019.006061
CCCTCCC268800.018.6650355
AAAGAGT297900.018.344686
GCCCGAA127350.018.3330751
CAAAGAG312400.018.211495
AGCCGGA111650.017.9401368
ATGTCCC345400.017.9370941
TAACGAC191350.017.8304441
GCTTTGA298650.017.74581710
ACCCGAC160350.017.70560510
TACCCGA160400.017.6793849
GCCATGG232350.017.6436731
CCCGAGG140850.017.532679
GTGGGAC146600.017.4897178
CACTAAG227250.017.4877011
CCTCCCG292850.017.353856
CGAAAAG108150.017.2911663
Produced by FastQC (version 0.11.5)